No. words: 1297; after pruning: 1271


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:624)  607  0.00 0.32 0.00  UCW005F_B08_BE352592At02P002D04D101F1_061.ab1        1   624 (19)  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   (28)   626     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   654 
   36    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1     8 
   40  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   615 
   48    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1    20 
   64  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   591 
   68    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1    40 
   80  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   575 
   84    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1    56 
  337  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   316 
  349    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1   321 
  433  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   220 
  437    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1   409 
  441  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   212 
  457    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1   429 
  461  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   192 
  465    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1   437 
  473  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   180 
  481    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1   453 
  497  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   156 
  501    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1   473 
  533  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   120 
  537    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1   509 
  541  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1   112 
  589    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1   561 
  593  C UCW005R_B08_BE352592At02P002D04D101R1_061.ab1    60 
  649    UCW005F_B08_BE352592At02P002D04D101F1_061.ab1   621 
Contig length: old 672, new 671

Contig length: old 671, new 671
New start: 0