No. words: 1258; after pruning: 1218


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:601)  585  0.17 0.17 0.00  UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1        1   601 (26)  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   (29)   602     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   631 
   49    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1    20 
   65  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   567 
   69    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1    40 
  109  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   523 
  113    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1    84 
  117  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   515 
  129    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   100 
  141  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   491 
  165    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   136 
  177  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   455 
  185    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   156 
  193  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   439 
  217    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   188 
  237  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   395 
  241    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   212 
  296  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   335 
  300    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   271 
  308  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   323 
  328    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   299 
  352  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   279 
  368    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   339 
  424  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   207 
  428    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   399 
  436  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   195 
  452    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   423 
  476  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1   155 
  532    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   503 
  536  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1    95 
  556    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   527 
  564  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1    67 
  568    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   539 
  572  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1    59 
  612    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   583 
  616  C UCW005R_A07_BE352592Ld01P002D04D101R1_049.ab1    15 
  624    UCW005F_A07_BE352592Ld01P002D04D101F1_049.ab1   595 
Contig length: old 656, new 656

Contig length: old 656, new 656
New start: 0