No. words: 1255; after pruning: 1229


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:600)  592  0.00 0.00 0.00  UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1        1   601 (24)  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   (29)   601     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   630 
   49    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1    20 
   57  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   574 
   77    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1    48 
  121  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   510 
  125    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1    96 
  129  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   502 
  133    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   104 
  145  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   486 
  169    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   140 
  173  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   458 
  189    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   160 
  213  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   418 
  217    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   188 
  237  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   394 
  253    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   224 
  281  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   350 
  301    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   272 
  313  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   318 
  341    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   312 
  357  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   274 
  393    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   364 
  413  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   218 
  433    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   404 
  477  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   154 
  489    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   460 
  501  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   130 
  513    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   484 
  521  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1   110 
  525    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   496 
  533  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1    98 
  545    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   516 
  557  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1    74 
  561    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   532 
  573  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1    58 
  585    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   556 
  593  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1    38 
  601    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   572 
  605  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1    26 
  609    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   580 
  621  C UCW005R_B07_BE352592Ld02P002D04D101R1_057.ab1    10 
  625    UCW005F_B07_BE352592Ld02P002D04D101F1_057.ab1   596 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0