No. words: 1256; after pruning: 1216


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:601)  588  0.00 0.17 0.00  UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1        1   601 (26)  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   (27)   602     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   629 
   35    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1     8 
   39  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   591 
   47    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1    20 
   63  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   567 
   67    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1    40 
   71  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   559 
   75    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1    48 
  103  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   527 
  115    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1    88 
  119  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   511 
  123    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1    96 
  143  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   487 
  163    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   136 
  179  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   451 
  187    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   160 
  191  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   439 
  199    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   172 
  301  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   328 
  305    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   278 
  313  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   316 
  329    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   302 
  333  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   296 
  337    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   310 
  413  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   216 
  429    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   402 
  437  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   192 
  445    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   418 
  489  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   140 
  493    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   466 
  517  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1   112 
  529    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   502 
  541  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1    88 
  545    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   518 
  549  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1    80 
  561    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   534 
  565  C UCW005R_C07_BE352592Ld03P002D04D101R1_050.ab1    64 
  601    UCW005F_C07_BE352592Ld03P002D04D101F1_050.ab1   574 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0