No. words: 1267; after pruning: 1227


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:608)  590  0.16 0.33 0.00  UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1        1   608 (27)  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   (22)   610     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   632 
   34    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1    11 
   82  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   551 
   94    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1    71 
  150  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   483 
  162    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   139 
  170  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   463 
  174    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   151 
  210  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   423 
  230    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   207 
  321  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   311 
  329    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   306 
  377  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   255 
  381    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   358 
  389  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   243 
  397    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   374 
  417  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   215 
  421    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   398 
  425  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   207 
  429    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   406 
  441  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   191 
  449    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   426 
  477  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   155 
  481    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   458 
  489  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1   143 
  541    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   518 
  545  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1    87 
  565    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   542 
  573  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1    59 
  589    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   566 
  597  C UCW005R_D07_BE352592Ld04P002D04D101R1_058.ab1    35 
  613    UCW005F_D07_BE352592Ld04P002D04D101F1_058.ab1   590 
Contig length: old 658, new 658

Contig length: old 658, new 658
New start: 0