No. words: 1253; after pruning: 1213


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:600)  588  0.00 0.17 0.00  UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1        1   600 (26)  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   (26)   601     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   627 
   46    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1    20 
   58  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   570 
   70    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1    44 
  106  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   522 
  114    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1    88 
  118  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   510 
  122    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1    96 
  142  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   486 
  162    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   136 
  190  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   438 
  202    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   176 
  210  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   418 
  214    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   188 
  306  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   321 
  338    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   312 
  350  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   277 
  366    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   340 
  418  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   209 
  426    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   400 
  438  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   189 
  446    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   420 
  454  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   173 
  462    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   436 
  474  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   153 
  490    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   464 
  498  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   129 
  510    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   484 
  518  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1   109 
  526    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   500 
  534  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1    93 
  542    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   516 
  546  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1    81 
  558    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   532 
  566  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1    61 
  610    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   584 
  614  C UCW005R_E07_BE352592Ld05P002D04D101R1_051.ab1    13 
  618    UCW005F_E07_BE352592Ld05P002D04D101F1_051.ab1   592 
Contig length: old 652, new 652

Contig length: old 652, new 652
New start: 0