No. words: 1250; after pruning: 1224


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:601)  588  0.00 0.17 0.00  UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1        1   601 (23)  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   (24)   602     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   626 
   44    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1    20 
   60  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   567 
   76    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1    52 
  104  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   523 
  124    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   100 
  140  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   487 
  160    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   136 
  164  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   463 
  184    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   160 
  188  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   439 
  200    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   176 
  212  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   415 
  216    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   192 
  298  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   328 
  334    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   310 
  350  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   276 
  366    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   342 
  410  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   216 
  426    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   402 
  430  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   196 
  446    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   422 
  478  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   148 
  490    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   466 
  502  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   124 
  510    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   486 
  514  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1   112 
  526    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   502 
  538  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1    88 
  542    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   518 
  546  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1    80 
  558    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   534 
  562  C UCW005R_F07_BE352592Ld06P002D04D101R1_059.ab1    64 
  610    UCW005F_F07_BE352592Ld06P002D04D101F1_059.ab1   586 
Contig length: old 648, new 648

Contig length: old 648, new 648
New start: 0