No. words: 1264; after pruning: 1238


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:608)  593  0.16 0.16 0.00  UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1        1   609 (26)  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   (19)   610     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   629 
   44    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1    24 
   64  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   566 
   72    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1    52 
   80  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   550 
   84    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1    64 
  108  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   522 
  116    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1    96 
  120  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   510 
  128    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   108 
  144  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   486 
  160    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   140 
  168  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   462 
  188    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   168 
  196  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   434 
  200    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   180 
  216  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   414 
  224    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   204 
  232  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   398 
  244    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   224 
  260  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   370 
  300    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   280 
  304  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   326 
  376    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   356 
  420  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   210 
  428    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   408 
  432  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   198 
  444    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   424 
  456  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   174 
  468    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   448 
  472  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   158 
  480    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   460 
  520  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1   110 
  524    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   504 
  536  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1    94 
  544    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   524 
  552  C UCW005R_G07_BE352592Ld07P002D04D101R1_052.ab1    78 
  624    UCW005F_G07_BE352592Ld07P002D04D101F1_052.ab1   604 
Contig length: old 655, new 655

Contig length: old 655, new 655
New start: 0