No. words: 1249; after pruning: 1209


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:601)  588  0.00 0.17 0.00  UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1        1   601 (19)  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   (27)   602     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   629 
   35    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1     8 
   39  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   591 
   43    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1    16 
   59  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   571 
   67    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1    40 
   79  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   551 
   83    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1    56 
  107  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   523 
  127    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   100 
  139  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   491 
  151    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   124 
  167  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   463 
  187    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   160 
  203  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   427 
  211    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   184 
  313  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   316 
  337    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   310 
  341  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   288 
  345    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   318 
  361  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   268 
  369    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   342 
  413  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   216 
  425    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   398 
  433  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   196 
  445    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   418 
  485  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1   144 
  489    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   462 
  573  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1    56 
  585    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   558 
  605  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1    24 
  609    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   582 
  617  C UCW005R_H07_BE352592Tu01P002D04D101R1_060.ab1    12 
  625    UCW005F_H07_BE352592Tu01P002D04D101F1_060.ab1   598 
Contig length: old 647, new 647

Contig length: old 647, new 647
New start: 0