No. words: 1268; after pruning: 1242


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   12    0.0 13.0 (1,1:613)  593  0.00 0.00 0.00  UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1       13   614 (24)  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   (28)   602     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
12       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   630 
   36    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1    20 
   40  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   591 
   48    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1    32 
   68  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   563 
   76    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1    60 
   80  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   551 
   84    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1    68 
  104  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   527 
  112    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1    96 
  152  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   479 
  160    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   144 
  168  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   463 
  176    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   160 
  196  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   435 
  216    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   200 
  240  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   391 
  252    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   236 
  276  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   355 
  340    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   324 
  372  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   259 
  412    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   396 
  416  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1   215 
  464    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   448 
  532  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1    99 
  536    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   520 
  540  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1    91 
  548    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   532 
  552  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1    79 
  560    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   544 
  572  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1    59 
  608    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   592 
  616  C UCW005R_D08_BE352592Tu02P002D04D101R1_062.ab1    15 
  624    UCW005F_D08_BE352592Tu02P002D04D101F1_062.ab1   608 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0