No. words: 1635; after pruning: 1609


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   13    0.0 15.1 (1,1:798)  750  0.00 0.13 0.00  UCW004F_A08_BE399630As01P002D02D081F1_053.ab1        1   785 (26)  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   (25)   799    14 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
13       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   824 
   29    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1     4 
  189  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   636 
  197    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   172 
  393  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   432 
  401    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   376 
  437  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   388 
  441    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   416 
  445  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   380 
  449    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   424 
  453  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   372 
  465    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   440 
  477  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   348 
  493    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   468 
  497  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   328 
  557    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   532 
  569  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   256 
  605    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   580 
  613  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   212 
  649    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   624 
  657  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   168 
  661    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   636 
  665  C UCW004R_A08_BE399630As01P002D02D081R1_053.ab1   160 
  807    UCW004F_A08_BE399630As01P002D02D081F1_053.ab1   781 
Contig length: old 836, new 837

Contig length: old 837, new 837
New start: 0