No. words: 1125; after pruning: 1050


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:697)  358  2.49 0.00 0.00  UCW004F_E08_BE399630As02P002D02D081F1_055.ab1        1   401 (0)  C UCW004R_E08_BE399630As02P002D02D081R1_055.ab1   (26)   698   298 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1  C UCW004R_E08_BE399630As02P002D02D081R1_055.ab1   724 
   42    UCW004F_E08_BE399630As02P002D02D081F1_055.ab1    16 
  138  C UCW004R_E08_BE399630As02P002D02D081R1_055.ab1   587 
  146    UCW004F_E08_BE399630As02P002D02D081F1_055.ab1   120 
  162  C UCW004R_E08_BE399630As02P002D02D081R1_055.ab1   563 
  170    UCW004F_E08_BE399630As02P002D02D081F1_055.ab1   144 
  178  C UCW004R_E08_BE399630As02P002D02D081R1_055.ab1   547 
  186    UCW004F_E08_BE399630As02P002D02D081F1_055.ab1   160 
  194  C UCW004R_E08_BE399630As02P002D02D081R1_055.ab1   531 
  202    UCW004F_E08_BE399630As02P002D02D081F1_055.ab1   176 
  230  C UCW004R_E08_BE399630As02P002D02D081R1_055.ab1   495 
  259    UCW004F_E08_BE399630As02P002D02D081F1_055.ab1   233 
  271  C UCW004R_E08_BE399630As02P002D02D081R1_055.ab1   454 
  287    UCW004F_E08_BE399630As02P002D02D081F1_055.ab1   261 
  295  C UCW004R_E08_BE399630As02P002D02D081R1_055.ab1   430 
  307    UCW004F_E08_BE399630As02P002D02D081F1_055.ab1   281 
  311  C UCW004R_E08_BE399630As02P002D02D081R1_055.ab1   414 
Contig length: old 724, new 724

Contig length: old 724, new 724
New start: 0 
S Change at: 38; seg lengths: entry 1, contig 1