No. words: 1761; after pruning: 1721


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.0 (1,1:897)  835  0.70 0.12 0.12  UCW005F_C10_BE403761At01P002D06D121F1_070.ab1       11   873 (0)  C UCW005R_C10_BE403761At01P002D06D121R1_070.ab1   (0)   888    26 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1    UCW005F_C10_BE403761At01P002D06D121F1_070.ab1     1 
  348  C UCW005R_C10_BE403761At01P002D06D121R1_070.ab1   552 
  352    UCW005F_C10_BE403761At01P002D06D121F1_070.ab1   352 
  372  C UCW005R_C10_BE403761At01P002D06D121R1_070.ab1   528 
  384    UCW005F_C10_BE403761At01P002D06D121F1_070.ab1   384 
  396  C UCW005R_C10_BE403761At01P002D06D121R1_070.ab1   504 
  416    UCW005F_C10_BE403761At01P002D06D121F1_070.ab1   416 
  464  C UCW005R_C10_BE403761At01P002D06D121R1_070.ab1   436 
  488    UCW005F_C10_BE403761At01P002D06D121F1_070.ab1   488 
  492  C UCW005R_C10_BE403761At01P002D06D121R1_070.ab1   408 
  500    UCW005F_C10_BE403761At01P002D06D121F1_070.ab1   500 
  504  C UCW005R_C10_BE403761At01P002D06D121R1_070.ab1   396 
Contig length: old 898, new 899

Contig length: old 899, new 899
New start: 0