No. words: 1729; after pruning: 1689


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:901)  807  0.24 0.12 0.24  UCW005F_B10_BE403761At02P002D06D121F1_077.ab1       21   848 (0)  C UCW005R_B10_BE403761At02P002D06D121R1_077.ab1   (0)   881    55 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  392 nodes

 198 str. conn. components

Path
    1    UCW005F_B10_BE403761At02P002D06D121F1_077.ab1     1 
  349  C UCW005R_B10_BE403761At02P002D06D121R1_077.ab1   554 
  353    UCW005F_B10_BE403761At02P002D06D121F1_077.ab1   353 
  377  C UCW005R_B10_BE403761At02P002D06D121R1_077.ab1   526 
  409    UCW005F_B10_BE403761At02P002D06D121F1_077.ab1   409 
  481  C UCW005R_B10_BE403761At02P002D06D121R1_077.ab1   422 
  489    UCW005F_B10_BE403761At02P002D06D121F1_077.ab1   489 
  497  C UCW005R_B10_BE403761At02P002D06D121R1_077.ab1   406 
  501    UCW005F_B10_BE403761At02P002D06D121F1_077.ab1   501 
  505  C UCW005R_B10_BE403761At02P002D06D121R1_077.ab1   398 
Contig length: old 902, new 902

Contig length: old 902, new 902
New start: 0