No. words: 1522; after pruning: 1496


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:902)  614  0.00 0.00 0.16  UCW005F_A09_BE403761Ld01P002D06D121F1_065.ab1       67   686 (0)  C UCW005R_A09_BE403761Ld01P002D06D121R1_065.ab1   (0)   836   218 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1    UCW005F_A09_BE403761Ld01P002D06D121F1_065.ab1     1 
  350  C UCW005R_A09_BE403761Ld01P002D06D121R1_065.ab1   554 
  354    UCW005F_A09_BE403761Ld01P002D06D121F1_065.ab1   354 
  374  C UCW005R_A09_BE403761Ld01P002D06D121R1_065.ab1   530 
  418    UCW005F_A09_BE403761Ld01P002D06D121F1_065.ab1   418 
  422  C UCW005R_A09_BE403761Ld01P002D06D121R1_065.ab1   482 
  426    UCW005F_A09_BE403761Ld01P002D06D121F1_065.ab1   426 
  430  C UCW005R_A09_BE403761Ld01P002D06D121R1_065.ab1   474 
  434    UCW005F_A09_BE403761Ld01P002D06D121F1_065.ab1   434 
  450  C UCW005R_A09_BE403761Ld01P002D06D121R1_065.ab1   454 
  458    UCW005F_A09_BE403761Ld01P002D06D121F1_065.ab1   458 
  462  C UCW005R_A09_BE403761Ld01P002D06D121R1_065.ab1   442 
  478    UCW005F_A09_BE403761Ld01P002D06D121F1_065.ab1   478 
  482  C UCW005R_A09_BE403761Ld01P002D06D121R1_065.ab1   422 
  486    UCW005F_A09_BE403761Ld01P002D06D121F1_065.ab1   486 
  490  C UCW005R_A09_BE403761Ld01P002D06D121R1_065.ab1   414 
Contig length: old 903, new 903

Contig length: old 903, new 903
New start: 0