No. words: 1639; after pruning: 1599


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.4 (1,1:854)  781  0.13 0.00 0.00  UCW005F_C09_BE403761Ld03P002D06D121F1_066.ab1       18   801 (0)  C UCW005R_C09_BE403761Ld03P002D06D121R1_066.ab1   (0)   838    55 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1    UCW005F_C09_BE403761Ld03P002D06D121F1_066.ab1     1 
  309  C UCW005R_C09_BE403761Ld03P002D06D121R1_066.ab1   547 
  313    UCW005F_C09_BE403761Ld03P002D06D121F1_066.ab1   313 
  337  C UCW005R_C09_BE403761Ld03P002D06D121R1_066.ab1   519 
  341    UCW005F_C09_BE403761Ld03P002D06D121F1_066.ab1   341 
  345  C UCW005R_C09_BE403761Ld03P002D06D121R1_066.ab1   511 
  373    UCW005F_C09_BE403761Ld03P002D06D121F1_066.ab1   373 
  385  C UCW005R_C09_BE403761Ld03P002D06D121R1_066.ab1   471 
  389    UCW005F_C09_BE403761Ld03P002D06D121F1_066.ab1   389 
  409  C UCW005R_C09_BE403761Ld03P002D06D121R1_066.ab1   447 
  417    UCW005F_C09_BE403761Ld03P002D06D121F1_066.ab1   417 
  429  C UCW005R_C09_BE403761Ld03P002D06D121R1_066.ab1   427 
  437    UCW005F_C09_BE403761Ld03P002D06D121F1_066.ab1   437 
  441  C UCW005R_C09_BE403761Ld03P002D06D121R1_066.ab1   415 
  449    UCW005F_C09_BE403761Ld03P002D06D121F1_066.ab1   449 
  453  C UCW005R_C09_BE403761Ld03P002D06D121R1_066.ab1   403 
Contig length: old 855, new 855

Contig length: old 855, new 855
New start: 0