No. words: 1398; after pruning: 1337


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:859)  510  1.49 0.19 0.19  UCW005F_D09_BE403761Ld04P002D06D121F1_074.ab1      295   832 (0)  C UCW005R_D09_BE403761Ld04P002D06D121R1_074.ab1   (0)   566    29 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1    UCW005F_D09_BE403761Ld04P002D06D121F1_074.ab1     1 
  470  C UCW005R_D09_BE403761Ld04P002D06D121R1_074.ab1   391 
  494    UCW005F_D09_BE403761Ld04P002D06D121F1_074.ab1   494 
  498  C UCW005R_D09_BE403761Ld04P002D06D121R1_074.ab1   363 
  524    UCW005F_D09_BE403761Ld04P002D06D121F1_074.ab1   524 
  532  C UCW005R_D09_BE403761Ld04P002D06D121R1_074.ab1   329 
  544    UCW005F_D09_BE403761Ld04P002D06D121F1_074.ab1   544 
  548  C UCW005R_D09_BE403761Ld04P002D06D121R1_074.ab1   313 
  570    UCW005F_D09_BE403761Ld04P002D06D121F1_074.ab1   571 
  574  C UCW005R_D09_BE403761Ld04P002D06D121R1_074.ab1   287 
  578    UCW005F_D09_BE403761Ld04P002D06D121F1_074.ab1   579 
  586  C UCW005R_D09_BE403761Ld04P002D06D121R1_074.ab1   275 
  590    UCW005F_D09_BE403761Ld04P002D06D121F1_074.ab1   591 
  598  C UCW005R_D09_BE403761Ld04P002D06D121R1_074.ab1   263 
Contig length: old 860, new 860

Contig length: old 860, new 860
New start: 0