No. words: 1737; after pruning: 1683


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:901)  820  0.24 0.12 0.12  UCW005F_F09_BE403761Ld06P002D06D121F1_075.ab1       13   847 (0)  C UCW005R_F09_BE403761Ld06P002D06D121R1_075.ab1   (0)   890    56 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1    UCW005F_F09_BE403761Ld06P002D06D121F1_075.ab1     1 
  345  C UCW005R_F09_BE403761Ld06P002D06D121R1_075.ab1   558 
  353    UCW005F_F09_BE403761Ld06P002D06D121F1_075.ab1   353 
  373  C UCW005R_F09_BE403761Ld06P002D06D121R1_075.ab1   530 
  417    UCW005F_F09_BE403761Ld06P002D06D121F1_075.ab1   417 
  429  C UCW005R_F09_BE403761Ld06P002D06D121R1_075.ab1   474 
  433    UCW005F_F09_BE403761Ld06P002D06D121F1_075.ab1   433 
  437  C UCW005R_F09_BE403761Ld06P002D06D121R1_075.ab1   466 
  441    UCW005F_F09_BE403761Ld06P002D06D121F1_075.ab1   441 
  445  C UCW005R_F09_BE403761Ld06P002D06D121R1_075.ab1   458 
  453    UCW005F_F09_BE403761Ld06P002D06D121F1_075.ab1   453 
  461  C UCW005R_F09_BE403761Ld06P002D06D121R1_075.ab1   442 
  465    UCW005F_F09_BE403761Ld06P002D06D121F1_075.ab1   465 
  469  C UCW005R_F09_BE403761Ld06P002D06D121R1_075.ab1   434 
  489    UCW005F_F09_BE403761Ld06P002D06D121F1_075.ab1   489 
  497  C UCW005R_F09_BE403761Ld06P002D06D121R1_075.ab1   406 
Contig length: old 902, new 902

Contig length: old 902, new 902
New start: 0