No. words: 1687; after pruning: 1633


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.0 (1,1:854)  815  0.60 0.12 0.00  UCW005F_G09_BE403761Ld07P002D06D121F1_068.ab1        1   832 (0)  C UCW005R_G09_BE403761Ld07P002D06D121R1_068.ab1   (0)   855    23 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  402 nodes

 203 str. conn. components

Path
    1    UCW005F_G09_BE403761Ld07P002D06D121F1_068.ab1     1 
  342  C UCW005R_G09_BE403761Ld07P002D06D121R1_068.ab1   513 
  374    UCW005F_G09_BE403761Ld07P002D06D121F1_068.ab1   374 
  402  C UCW005R_G09_BE403761Ld07P002D06D121R1_068.ab1   453 
  414    UCW005F_G09_BE403761Ld07P002D06D121F1_068.ab1   414 
  426  C UCW005R_G09_BE403761Ld07P002D06D121R1_068.ab1   429 
  434    UCW005F_G09_BE403761Ld07P002D06D121F1_068.ab1   434 
  438  C UCW005R_G09_BE403761Ld07P002D06D121R1_068.ab1   417 
  446    UCW005F_G09_BE403761Ld07P002D06D121F1_068.ab1   446 
  450  C UCW005R_G09_BE403761Ld07P002D06D121R1_068.ab1   405 
Contig length: old 855, new 854

Contig length: old 854, new 854
New start: 0