No. words: 1355; after pruning: 1329


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:682)  625  0.00 0.00 0.16  UCW047_F11_BE403761Sn24P002D06P022E111R1_085.ab1        1   631 (0)  C UCW048_F11_BE403761Sn24P002D06P022E111F1_085.ab1   (42)   682    53 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW048_F11_BE403761Sn24P002D06P022E111F1_085.ab1   724 
   78    UCW047_F11_BE403761Sn24P002D06P022E111R1_085.ab1    36 
  126  C UCW048_F11_BE403761Sn24P002D06P022E111F1_085.ab1   599 
Contig length: old 724, new 724

Contig length: old 724, new 724
New start: 0