No. words: 941; after pruning: 915


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.3 (1,1:685)  208  0.93 0.00 0.00  UCW047_B12_BE403761Sn27P002D06P022E111R1_094.ab1        1   214 (0)  C UCW048_B12_BE403761Sn27P002D06P022E111F1_094.ab1   (41)   686   473 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1  C UCW048_B12_BE403761Sn27P002D06P022E111F1_094.ab1   727 
  113    UCW047_B12_BE403761Sn27P002D06P022E111R1_094.ab1    72 
  117  C UCW048_B12_BE403761Sn27P002D06P022E111F1_094.ab1   611 
  121    UCW047_B12_BE403761Sn27P002D06P022E111R1_094.ab1    80 
  125  C UCW048_B12_BE403761Sn27P002D06P022E111F1_094.ab1   603 
Contig length: old 727, new 727

Contig length: old 727, new 727
New start: 0