No. words: 1200; after pruning: 1174


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:681)  476  0.41 0.00 0.00  UCW047_C12_BE403761Sn28P002D06P022E111R1_092.ab1        1   482 (0)  C UCW048_C12_BE403761Sn28P002D06P022E111F1_092.ab1   (36)   682   201 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCW048_C12_BE403761Sn28P002D06P022E111F1_092.ab1   718 
   44    UCW047_C12_BE403761Sn28P002D06P022E111R1_092.ab1     8 
   48  C UCW048_C12_BE403761Sn28P002D06P022E111F1_092.ab1   671 
   76    UCW047_C12_BE403761Sn28P002D06P022E111R1_092.ab1    40 
   84  C UCW048_C12_BE403761Sn28P002D06P022E111F1_092.ab1   635 
   88    UCW047_C12_BE403761Sn28P002D06P022E111R1_092.ab1    52 
  100  C UCW048_C12_BE403761Sn28P002D06P022E111F1_092.ab1   619 
  112    UCW047_C12_BE403761Sn28P002D06P022E111R1_092.ab1    76 
  120  C UCW048_C12_BE403761Sn28P002D06P022E111F1_092.ab1   599 
  152    UCW047_C12_BE403761Sn28P002D06P022E111R1_092.ab1   116 
  164  C UCW048_C12_BE403761Sn28P002D06P022E111F1_092.ab1   555 
Contig length: old 718, new 718

Contig length: old 718, new 718
New start: 0