No. words: 1174; after pruning: 1148


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:622)  436  0.67 0.00 0.00  UCW047_E12_BE403761Sn30P002D06P022E111R1_088.ab1        1   445 (0)  C UCW048_E12_BE403761Sn30P002D06P022E111F1_088.ab1   (106)   623   179 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCW048_E12_BE403761Sn30P002D06P022E111F1_088.ab1   729 
  110    UCW047_E12_BE403761Sn30P002D06P022E111R1_088.ab1     4 
  134  C UCW048_E12_BE403761Sn30P002D06P022E111F1_088.ab1   596 
  153    UCW047_E12_BE403761Sn30P002D06P022E111R1_088.ab1    47 
  165  C UCW048_E12_BE403761Sn30P002D06P022E111F1_088.ab1   565 
  185    UCW047_E12_BE403761Sn30P002D06P022E111R1_088.ab1    79 
  193  C UCW048_E12_BE403761Sn30P002D06P022E111F1_088.ab1   537 
  241    UCW047_E12_BE403761Sn30P002D06P022E111R1_088.ab1   135 
  245  C UCW048_E12_BE403761Sn30P002D06P022E111F1_088.ab1   485 
Contig length: old 729, new 729

Contig length: old 729, new 729
New start: 0