No. words: 1193; after pruning: 1167


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:659)  461  1.24 0.21 0.00  UCW047_F12_BE403761Sn31P002D06P022E111R1_086.ab1        1   483 (0)  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   (49)   661   178 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   710 
   53    UCW047_F12_BE403761Sn31P002D06P022E111R1_086.ab1     4 
   57  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   654 
   91    UCW047_F12_BE403761Sn31P002D06P022E111R1_086.ab1    41 
   95  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   616 
  103    UCW047_F12_BE403761Sn31P002D06P022E111R1_086.ab1    53 
  119  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   592 
  139    UCW047_F12_BE403761Sn31P002D06P022E111R1_086.ab1    89 
  159  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   552 
  171    UCW047_F12_BE403761Sn31P002D06P022E111R1_086.ab1   121 
  175  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   536 
  195    UCW047_F12_BE403761Sn31P002D06P022E111R1_086.ab1   145 
  199  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   512 
  219    UCW047_F12_BE403761Sn31P002D06P022E111R1_086.ab1   169 
  223  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   488 
  227    UCW047_F12_BE403761Sn31P002D06P022E111R1_086.ab1   177 
  235  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   476 
  327    UCW047_F12_BE403761Sn31P002D06P022E111R1_086.ab1   277 
  331  C UCW048_F12_BE403761Sn31P002D06P022E111F1_086.ab1   380 
Contig length: old 710, new 710

Contig length: old 710, new 710
New start: 0