No. words: 798; after pruning: 772


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.5 (1,1:664)  130  0.75 0.00 0.00  UCW047_A10_BE403761Ta11P002D06P022E111R1_080.ab1       46   178 (0)  C UCW048_A10_BE403761Ta11P002D06P022E111F1_080.ab1   (0)   620   488 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  64 nodes

 34 str. conn. components

Path
    1    UCW047_A10_BE403761Ta11P002D06P022E111R1_080.ab1     1 
   69  C UCW048_A10_BE403761Ta11P002D06P022E111F1_080.ab1   597 
   73    UCW047_A10_BE403761Ta11P002D06P022E111R1_080.ab1    73 
   81  C UCW048_A10_BE403761Ta11P002D06P022E111F1_080.ab1   585 
   85    UCW047_A10_BE403761Ta11P002D06P022E111R1_080.ab1    85 
   89  C UCW048_A10_BE403761Ta11P002D06P022E111F1_080.ab1   577 
   93    UCW047_A10_BE403761Ta11P002D06P022E111R1_080.ab1    93 
  109  C UCW048_A10_BE403761Ta11P002D06P022E111F1_080.ab1   557 
  121    UCW047_A10_BE403761Ta11P002D06P022E111R1_080.ab1   121 
  125  C UCW048_A10_BE403761Ta11P002D06P022E111F1_080.ab1   541 
Contig length: old 665, new 665

Contig length: old 665, new 665
New start: 0