No. words: 1328; after pruning: 1302


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:686)  591  0.33 0.00 0.17  UCW047_C10_BE403761Ta13P002D06P022E111R1_076.ab1        1   603 (0)  C UCW048_C10_BE403761Ta13P002D06P022E111F1_076.ab1   (39)   686    85 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C UCW048_C10_BE403761Ta13P002D06P022E111F1_076.ab1   725 
   47    UCW047_C10_BE403761Ta13P002D06P022E111R1_076.ab1     8 
   55  C UCW048_C10_BE403761Ta13P002D06P022E111F1_076.ab1   671 
   79    UCW047_C10_BE403761Ta13P002D06P022E111R1_076.ab1    40 
  119  C UCW048_C10_BE403761Ta13P002D06P022E111F1_076.ab1   607 
  123    UCW047_C10_BE403761Ta13P002D06P022E111R1_076.ab1    84 
  131  C UCW048_C10_BE403761Ta13P002D06P022E111F1_076.ab1   595 
  147    UCW047_C10_BE403761Ta13P002D06P022E111R1_076.ab1   108 
  155  C UCW048_C10_BE403761Ta13P002D06P022E111F1_076.ab1   571 
  239    UCW047_C10_BE403761Ta13P002D06P022E111R1_076.ab1   200 
  243  C UCW048_C10_BE403761Ta13P002D06P022E111F1_076.ab1   483 
Contig length: old 725, new 725

Contig length: old 725, new 725
New start: 0