No. words: 1030; after pruning: 1004


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:662)  312  0.00 0.00 0.00  UCW047_D10_BE403761Ta14P002D06P022E111R1_074.ab1        1   312 (0)  C UCW048_D10_BE403761Ta14P002D06P022E111F1_074.ab1   (55)   663   352 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1  C UCW048_D10_BE403761Ta14P002D06P022E111F1_074.ab1   718 
   91    UCW047_D10_BE403761Ta14P002D06P022E111R1_074.ab1    36 
  115  C UCW048_D10_BE403761Ta14P002D06P022E111F1_074.ab1   604 
  119    UCW047_D10_BE403761Ta14P002D06P022E111R1_074.ab1    64 
  123  C UCW048_D10_BE403761Ta14P002D06P022E111F1_074.ab1   596 
Contig length: old 718, new 718

Contig length: old 718, new 718
New start: 0