No. words: 1586; after pruning: 1560


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.1 (1,1:770)  762  0.00 0.00 0.13  UCW047_E03_BE403761Ta21P002D06P022C111R1_023.ab1        1   771 (31)  C UCW048_E03_BE403761Ta21P002D06P022C111F1_023.ab1   (14)   770     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C UCW048_E03_BE403761Ta21P002D06P022C111F1_023.ab1   784 
   18    UCW047_E03_BE403761Ta21P002D06P022C111R1_023.ab1     4 
  530  C UCW048_E03_BE403761Ta21P002D06P022C111F1_023.ab1   255 
  538    UCW047_E03_BE403761Ta21P002D06P022C111R1_023.ab1   524 
  622  C UCW048_E03_BE403761Ta21P002D06P022C111F1_023.ab1   163 
  634    UCW047_E03_BE403761Ta21P002D06P022C111R1_023.ab1   620 
  642  C UCW048_E03_BE403761Ta21P002D06P022C111F1_023.ab1   143 
  734    UCW047_E03_BE403761Ta21P002D06P022C111R1_023.ab1   720 
  738  C UCW048_E03_BE403761Ta21P002D06P022C111F1_023.ab1    47 
  758    UCW047_E03_BE403761Ta21P002D06P022C111R1_023.ab1   744 
  762  C UCW048_E03_BE403761Ta21P002D06P022C111F1_023.ab1    23 
  766    UCW047_E03_BE403761Ta21P002D06P022C111R1_023.ab1   752 
Contig length: old 815, new 816

Contig length: old 816, new 816
New start: 0