No. words: 1320; after pruning: 1294


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.8 (1,1:792)  520  0.19 0.00 0.00  UCW047_E01_BE403761Td05P002D06P022C111R1_007.ab1      259   783 (0)  C UCW048_E01_BE403761Td05P002D06P022C111F1_007.ab1   (2)   535    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1    UCW047_E01_BE403761Td05P002D06P022C111R1_007.ab1     1 
  534  C UCW048_E01_BE403761Td05P002D06P022C111F1_007.ab1   260 
  542    UCW047_E01_BE403761Td05P002D06P022C111R1_007.ab1   542 
  550  C UCW048_E01_BE403761Td05P002D06P022C111F1_007.ab1   244 
  554    UCW047_E01_BE403761Td05P002D06P022C111R1_007.ab1   554 
  574  C UCW048_E01_BE403761Td05P002D06P022C111F1_007.ab1   220 
  582    UCW047_E01_BE403761Td05P002D06P022C111R1_007.ab1   582 
  586  C UCW048_E01_BE403761Td05P002D06P022C111F1_007.ab1   208 
  618    UCW047_E01_BE403761Td05P002D06P022C111R1_007.ab1   618 
  626  C UCW048_E01_BE403761Td05P002D06P022C111F1_007.ab1   168 
  772    UCW047_E01_BE403761Td05P002D06P022C111R1_007.ab1   772 
  780  C UCW048_E01_BE403761Td05P002D06P022C111F1_007.ab1    14 
Contig length: old 793, new 793

Contig length: old 793, new 793
New start: 0