No. words: 1736; after pruning: 1696


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.6 (1,1:897)  816  0.84 0.00 0.00  UCW005F_H09_BE403761Tu01P002D06D121F1_076.ab1       13   850 (0)  C UCW005R_H09_BE403761Tu01P002D06D121R1_076.ab1   (0)   886    49 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  410 nodes

 207 str. conn. components

Path
    1    UCW005F_H09_BE403761Tu01P002D06D121F1_076.ab1     1 
  376  C UCW005R_H09_BE403761Tu01P002D06D121R1_076.ab1   523 
  380    UCW005F_H09_BE403761Tu01P002D06D121F1_076.ab1   380 
  448  C UCW005R_H09_BE403761Tu01P002D06D121R1_076.ab1   451 
  452    UCW005F_H09_BE403761Tu01P002D06D121F1_076.ab1   452 
  464  C UCW005R_H09_BE403761Tu01P002D06D121R1_076.ab1   435 
  476    UCW005F_H09_BE403761Tu01P002D06D121F1_076.ab1   476 
  492  C UCW005R_H09_BE403761Tu01P002D06D121R1_076.ab1   407 
Contig length: old 898, new 898

Contig length: old 898, new 898
New start: 0