No. words: 1445; after pruning: 1419


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:907)  516  0.19 0.19 0.00  UCW002F_C04_BE404490At01P002A06A121F1_022.ab1      189   724 (0)  C UCW002R_C04_BE404490At01P002A06A121R1_022.ab1   (0)   721   185 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1    UCW002F_C04_BE404490At01P002A06A121F1_022.ab1     1 
  327  C UCW002R_C04_BE404490At01P002A06A121R1_022.ab1   582 
  331    UCW002F_C04_BE404490At01P002A06A121F1_022.ab1   331 
  402  C UCW002R_C04_BE404490At01P002A06A121R1_022.ab1   507 
  426    UCW002F_C04_BE404490At01P002A06A121F1_022.ab1   426 
  434  C UCW002R_C04_BE404490At01P002A06A121R1_022.ab1   475 
  454    UCW002F_C04_BE404490At01P002A06A121F1_022.ab1   454 
  458  C UCW002R_C04_BE404490At01P002A06A121R1_022.ab1   451 
  466    UCW002F_C04_BE404490At01P002A06A121F1_022.ab1   466 
  470  C UCW002R_C04_BE404490At01P002A06A121R1_022.ab1   439 
Contig length: old 908, new 908

Contig length: old 908, new 908
New start: 0