No. words: 3363; after pruning: 3297


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.0 (1,1:887)  766  0.38 0.00 0.00  UCW030F_H06_BE404490At02P014E05P014E111F1_034.ab1       43   835 (0)  C UCW030R_H06_BE404490At02P014E05P014E111R1_034.ab1   (0)   846    54 *
Merge:(0)    0    0.0 14.2 (2,1:887)  819  0.47 0.00 0.00  UCW030R_H06_BE404490At02P014E05P014E111R1_034.ab1        1   846 (0)    UCW017R_H10_BE404490At02P014E05P014E111R1_066.ab1        1   846 (80) *
Merge:(0)    0    0.0 13.8 (3,1:0)  721  0.53 0.00 0.13  UCW017R_H10_BE404490At02P014E05P014E111R1_066.ab1      133   889 (37)  C UCW017F_H10_BE404490At02P014E05P014E111F1_066.ab1   (0)   756     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  2274 nodes

 603 str. conn. components

Path
    1  C UCW017R_H10_BE404490At02P014E05P014E111R1_066.ab1   926 
   52    UCW017F_H10_BE404490At02P014E05P014E111F1_066.ab1    14 
   61    UCW030F_H06_BE404490At02P014E05P014E111F1_034.ab1    23 
   73    UCW017F_H10_BE404490At02P014E05P014E111F1_066.ab1    35 
   92    UCW030F_H06_BE404490At02P014E05P014E111F1_034.ab1    54 
  113    UCW017F_H10_BE404490At02P014E05P014E111F1_066.ab1    75 
  141    UCW030F_H06_BE404490At02P014E05P014E111F1_034.ab1   103 
  176    UCW017F_H10_BE404490At02P014E05P014E111F1_066.ab1   138 
  325  C UCW030R_H06_BE404490At02P014E05P014E111R1_034.ab1   602 
  329    UCW030F_H06_BE404490At02P014E05P014E111F1_034.ab1   291 
  349  C UCW030R_H06_BE404490At02P014E05P014E111R1_034.ab1   578 
  409    UCW017F_H10_BE404490At02P014E05P014E111F1_066.ab1   371 
  427  C UCW017R_H10_BE404490At02P014E05P014E111R1_066.ab1   500 
  789  C UCW030R_H06_BE404490At02P014E05P014E111R1_034.ab1   138 
  801  C UCW017R_H10_BE404490At02P014E05P014E111R1_066.ab1   126 
  899  C UCW030R_H06_BE404490At02P014E05P014E111R1_034.ab1    28 
  907  C UCW017R_H10_BE404490At02P014E05P014E111R1_066.ab1    20 
Contig length: old 926, new 926

Contig length: old 926, new 926
New start: 0