No. words: 1494; after pruning: 1440


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:918)  543  1.04 0.00 0.17  UCW002F_A03_BE404490Ld01P002A06A121F1_017.ab1      163   737 (0)  C UCW002R_A03_BE404490Ld01P002A06A121R1_017.ab1   (0)   757   184 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1    UCW002F_A03_BE404490Ld01P002A06A121F1_017.ab1     1 
  533  C UCW002R_A03_BE404490Ld01P002A06A121R1_017.ab1   387 
  563    UCW002F_A03_BE404490Ld01P002A06A121F1_017.ab1   564 
  567  C UCW002R_A03_BE404490Ld01P002A06A121R1_017.ab1   353 
  579    UCW002F_A03_BE404490Ld01P002A06A121F1_017.ab1   580 
  583  C UCW002R_A03_BE404490Ld01P002A06A121R1_017.ab1   337 
  595    UCW002F_A03_BE404490Ld01P002A06A121F1_017.ab1   596 
  599  C UCW002R_A03_BE404490Ld01P002A06A121R1_017.ab1   321 
  603    UCW002F_A03_BE404490Ld01P002A06A121F1_017.ab1   604 
  607  C UCW002R_A03_BE404490Ld01P002A06A121R1_017.ab1   313 
  635    UCW002F_A03_BE404490Ld01P002A06A121F1_017.ab1   636 
  639  C UCW002R_A03_BE404490Ld01P002A06A121R1_017.ab1   281 
  647    UCW002F_A03_BE404490Ld01P002A06A121F1_017.ab1   648 
  651  C UCW002R_A03_BE404490Ld01P002A06A121R1_017.ab1   269 
Contig length: old 919, new 919

Contig length: old 919, new 919
New start: 0