No. words: 1604; after pruning: 1564


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:888)  632  1.18 0.15 0.00  UCW017F_A09_BE404490Ld01P014E05P014E111F1_079.ab1        1   677 (0)  C UCW017R_A09_BE404490Ld01P014E05P014E111R1_079.ab1   (37)   890   213 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW017R_A09_BE404490Ld01P014E05P014E111R1_079.ab1   927 
   52    UCW017F_A09_BE404490Ld01P014E05P014E111F1_079.ab1    14 
  263  C UCW017R_A09_BE404490Ld01P014E05P014E111R1_079.ab1   665 
  271    UCW017F_A09_BE404490Ld01P014E05P014E111F1_079.ab1   233 
  275  C UCW017R_A09_BE404490Ld01P014E05P014E111R1_079.ab1   653 
Contig length: old 927, new 927

Contig length: old 927, new 927
New start: 0