No. words: 1410; after pruning: 1384


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.8 (1,1:889)  473  1.54 0.00 0.00  UCW017F_B09_BE404490Ld02P014E05P014E111F1_077.ab1       23   540 (2)  C UCW017R_B09_BE404490Ld02P014E05P014E111R1_077.ab1   (0)   868   351 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1    UCW017F_B09_BE404490Ld02P014E05P014E111F1_077.ab1     1 
  232  C UCW017R_B09_BE404490Ld02P014E05P014E111R1_077.ab1   659 
  240    UCW017F_B09_BE404490Ld02P014E05P014E111F1_077.ab1   240 
  256  C UCW017R_B09_BE404490Ld02P014E05P014E111R1_077.ab1   635 
  264    UCW017F_B09_BE404490Ld02P014E05P014E111F1_077.ab1   264 
  276  C UCW017R_B09_BE404490Ld02P014E05P014E111R1_077.ab1   615 
Contig length: old 890, new 890

Contig length: old 890, new 890
New start: 0