No. words: 1461; after pruning: 1421


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:877)  549  0.69 0.00 0.34  UCW002F_C03_BE404490Ld03P002A06A121F1_018.ab1      132   714 (0)  C UCW002R_C03_BE404490Ld03P002A06A121R1_018.ab1   (0)   747   167 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1    UCW002F_C03_BE404490Ld03P002A06A121F1_018.ab1     1 
  477  C UCW002R_C03_BE404490Ld03P002A06A121R1_018.ab1   402 
  485    UCW002F_C03_BE404490Ld03P002A06A121F1_018.ab1   485 
  505  C UCW002R_C03_BE404490Ld03P002A06A121R1_018.ab1   374 
  529    UCW002F_C03_BE404490Ld03P002A06A121F1_018.ab1   530 
  537  C UCW002R_C03_BE404490Ld03P002A06A121R1_018.ab1   342 
  553    UCW002F_C03_BE404490Ld03P002A06A121F1_018.ab1   554 
  569  C UCW002R_C03_BE404490Ld03P002A06A121R1_018.ab1   310 
  617    UCW002F_C03_BE404490Ld03P002A06A121F1_018.ab1   618 
  621  C UCW002R_C03_BE404490Ld03P002A06A121R1_018.ab1   258 
Contig length: old 878, new 878

Contig length: old 878, new 878
New start: 0