No. words: 1483; after pruning: 1457


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.1 (1,1:922)  501  1.43 0.36 0.54  UCW002F_F03_BE404490Ld06P002A06A121F1_027.ab1      161   719 (0)  C UCW002R_F03_BE404490Ld06P002A06A121R1_027.ab1   (0)   764   207 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1    UCW002F_F03_BE404490Ld06P002A06A121F1_027.ab1     1 
  508  C UCW002R_F03_BE404490Ld06P002A06A121R1_027.ab1   415 
  512    UCW002F_F03_BE404490Ld06P002A06A121F1_027.ab1   512 
  516  C UCW002R_F03_BE404490Ld06P002A06A121R1_027.ab1   407 
  520    UCW002F_F03_BE404490Ld06P002A06A121F1_027.ab1   520 
  536  C UCW002R_F03_BE404490Ld06P002A06A121R1_027.ab1   387 
  598    UCW002F_F03_BE404490Ld06P002A06A121F1_027.ab1   601 
  606  C UCW002R_F03_BE404490Ld06P002A06A121R1_027.ab1   317 
  650    UCW002F_F03_BE404490Ld06P002A06A121F1_027.ab1   653 
  660  C UCW002R_F03_BE404490Ld06P002A06A121R1_027.ab1   263 
Contig length: old 923, new 922

Contig length: old 922, new 922
New start: 0