No. words: 1471; after pruning: 1403


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.2 (1,1:889)  521  1.72 0.34 0.52  UCW002F_H03_BE404490Ld08P002A06A121F1_028.ab1      139   718 (0)  C UCW002R_H03_BE404490Ld08P002A06A121R1_028.ab1   (0)   753   175 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1    UCW002F_H03_BE404490Ld08P002A06A121F1_028.ab1     1 
  473  C UCW002R_H03_BE404490Ld08P002A06A121R1_028.ab1   417 
  477    UCW002F_H03_BE404490Ld08P002A06A121F1_028.ab1   477 
  493  C UCW002R_H03_BE404490Ld08P002A06A121R1_028.ab1   397 
Contig length: old 890, new 889

Contig length: old 889, new 889
New start: 0