No. words: 3403; after pruning: 3337


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.2 (1,1:887)  833  0.46 0.11 0.00  UCW030F_H01_BE404490Tu01P014E05P014E111F1_001.ab1        1   872 (0)  C UCW030R_H01_BE404490Tu01P014E05P014E111R1_001.ab1   (40)   889    17 *
Merge:(0)    1    0.0 12.3 (1,1:884)  647  0.29 0.15 0.15  UCW017F_C10_BE404490Tu01P014E05P014E111F1_076.ab1        2   683 (0)  C UCW017R_C10_BE404490Tu01P014E05P014E111R1_076.ab1   (36)   883   202 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  420 nodes

 212 str. conn. components

Path
    1  C UCW030R_H01_BE404490Tu01P014E05P014E111R1_001.ab1   929 
   64    UCW030F_H01_BE404490Tu01P014E05P014E111F1_001.ab1    23 
  152  C UCW030R_H01_BE404490Tu01P014E05P014E111R1_001.ab1   778 
  160    UCW030F_H01_BE404490Tu01P014E05P014E111F1_001.ab1   119 
  280  C UCW030R_H01_BE404490Tu01P014E05P014E111R1_001.ab1   650 
  544    UCW030F_H01_BE404490Tu01P014E05P014E111F1_001.ab1   503 
  548  C UCW030R_H01_BE404490Tu01P014E05P014E111R1_001.ab1   382 
  556    UCW030F_H01_BE404490Tu01P014E05P014E111F1_001.ab1   515 
  592  C UCW030R_H01_BE404490Tu01P014E05P014E111R1_001.ab1   338 
  620    UCW030F_H01_BE404490Tu01P014E05P014E111F1_001.ab1   579 
  628  C UCW030R_H01_BE404490Tu01P014E05P014E111R1_001.ab1   302 
  644    UCW030F_H01_BE404490Tu01P014E05P014E111F1_001.ab1   603 
  648  C UCW030R_H01_BE404490Tu01P014E05P014E111R1_001.ab1   282 
Contig length: old 929, new 929

Contig 1:  332 nodes

 168 str. conn. components

Path
    1  C UCW017R_C10_BE404490Tu01P014E05P014E111R1_076.ab1   919 
   42    UCW017F_C10_BE404490Tu01P014E05P014E111F1_076.ab1     7 
   46  C UCW017R_C10_BE404490Tu01P014E05P014E111R1_076.ab1   874 
   50    UCW017F_C10_BE404490Tu01P014E05P014E111F1_076.ab1    15 
  329  C UCW017R_C10_BE404490Tu01P014E05P014E111R1_076.ab1   591 
Contig length: old 919, new 919

Contig length: old 929, new 929
New start: 0 

Contig length: old 919, new 919
New start: 0