No. words: 2432; after pruning: 2380


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.5 (1,1:891)  496  1.46 0.00 0.18  UCW030F_H02_BE404490Tu02P014E05P014E111F1_002.ab1        1   547 (3)  C UCW030R_H02_BE404490Tu02P014E05P014E111R1_002.ab1   (43)   891   346 *
Merge:(0)    0    0.0 1.4 (1,1:884)   63  0.00 0.00 0.00  UCW017F_D10_BE404490Tu02P014E05P014E111F1_074.ab1      615   677 (0)  C UCW017R_D10_BE404490Tu02P014E05P014E111R1_074.ab1   (0)   271   209 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    
Fail: (1)  208  -13.6 -5.7 (2,2:-2)  632  0.89 0.15 0.00  UCW017F_D10_BE404490Tu02P014E05P014E111F1_074.ab1        1   677 (0)  C UCW030R_H02_BE404490Tu02P014E05P014E111R1_002.ab1   (43)   891   214 *
  Worst pair: offset 0 
LLR breakdown: discreps: -25.1 (<20 part: -1.1 (#=10), >20:-24.0 (#=6); in HQ: -25.1, out HQ 0.0), match: 11.8  trail: -0.4  total: -13.7  472  2.57 0.37 0.00  UCW017F_D10_BE404490Tu02P014E05P014E111F1_074.ab1        1   545 (132)    UCW030F_H02_BE404490Tu02P014E05P014E111F1_002.ab1        1   547 (3) *

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-13.6       0        1

Gap   # merges  # failures
 size
208       0        1

Offset
  0       1 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  260 nodes

 132 str. conn. components

Path
    1  C UCW030R_H02_BE404490Tu02P014E05P014E111R1_002.ab1   934 
   50    UCW030F_H02_BE404490Tu02P014E05P014E111F1_002.ab1     7 
   78  C UCW030R_H02_BE404490Tu02P014E05P014E111R1_002.ab1   857 
   95    UCW030F_H02_BE404490Tu02P014E05P014E111F1_002.ab1    53 
  119  C UCW030R_H02_BE404490Tu02P014E05P014E111R1_002.ab1   816 
  135    UCW030F_H02_BE404490Tu02P014E05P014E111F1_002.ab1    93 
  415  C UCW030R_H02_BE404490Tu02P014E05P014E111R1_002.ab1   520 
Contig length: old 934, new 934

Contig 1:  34 nodes

 19 str. conn. components

Path
    1    UCW017F_D10_BE404490Tu02P014E05P014E111F1_074.ab1     1 
  654  C UCW017R_D10_BE404490Tu02P014E05P014E111R1_074.ab1   232 
  658    UCW017F_D10_BE404490Tu02P014E05P014E111F1_074.ab1   658 
  666  C UCW017R_D10_BE404490Tu02P014E05P014E111R1_074.ab1   220 
  670    UCW017F_D10_BE404490Tu02P014E05P014E111F1_074.ab1   670 
  674  C UCW017R_D10_BE404490Tu02P014E05P014E111R1_074.ab1   212 
Contig length: old 885, new 885

Contig length: old 934, new 934
New start: 0 

Contig length: old 885, new 885
New start: 0