No. words: 1800; after pruning: 1748


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:403)  387  0.00 0.74 0.00  UCW017F_D12_BE404894As01P014F05P014F111F1_090.ab1        1   403 (43)  C UCW017R_D12_BE404894As01P014F05P014F111R1_090.ab1   (44)   406     1 *
Merge:(0)    0    0.0 7.1 (1,1:400)  379  0.00 0.75 0.25  UCW030F_A09_BE404894As01P014F05P014F111F1_079.ab1        1   401 (54)  C UCW030R_A09_BE404894As01P014F05P014F111R1_079.ab1   (46)   403     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  190 nodes

 97 str. conn. components

Path
    1  C UCW030R_A09_BE404894As01P014F05P014F111R1_079.ab1   449 
   75    UCW030F_A09_BE404894As01P014F05P014F111F1_079.ab1    26 
   87  C UCW030R_A09_BE404894As01P014F05P014F111R1_079.ab1   363 
  107    UCW030F_A09_BE404894As01P014F05P014F111F1_079.ab1    58 
  111  C UCW030R_A09_BE404894As01P014F05P014F111R1_079.ab1   339 
  139    UCW030F_A09_BE404894As01P014F05P014F111F1_079.ab1    90 
  147  C UCW030R_A09_BE404894As01P014F05P014F111R1_079.ab1   303 
  159    UCW030F_A09_BE404894As01P014F05P014F111F1_079.ab1   110 
  403  C UCW030R_A09_BE404894As01P014F05P014F111R1_079.ab1    47 
  411    UCW030F_A09_BE404894As01P014F05P014F111F1_079.ab1   362 
Contig length: old 503, new 504

Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C UCW017R_D12_BE404894As01P014F05P014F111R1_090.ab1   450 
   69    UCW017F_D12_BE404894As01P014F05P014F111F1_090.ab1    22 
  101  C UCW017R_D12_BE404894As01P014F05P014F111R1_090.ab1   350 
  105    UCW017F_D12_BE404894As01P014F05P014F111F1_090.ab1    58 
  109  C UCW017R_D12_BE404894As01P014F05P014F111R1_090.ab1   342 
  113    UCW017F_D12_BE404894As01P014F05P014F111F1_090.ab1    66 
  141  C UCW017R_D12_BE404894As01P014F05P014F111R1_090.ab1   310 
  149    UCW017F_D12_BE404894As01P014F05P014F111F1_090.ab1   102 
  297  C UCW017R_D12_BE404894As01P014F05P014F111R1_090.ab1   154 
  417    UCW017F_D12_BE404894As01P014F05P014F111F1_090.ab1   370 
  421  C UCW017R_D12_BE404894As01P014F05P014F111R1_090.ab1    30 
  437    UCW017F_D12_BE404894As01P014F05P014F111F1_090.ab1   390 
  441  C UCW017R_D12_BE404894As01P014F05P014F111R1_090.ab1    10 
  445    UCW017F_D12_BE404894As01P014F05P014F111F1_090.ab1   398 
Contig length: old 492, new 493

Contig length: old 504, new 504
New start: 0 

Contig length: old 493, new 493
New start: 0