No. words: 1796; after pruning: 1744


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.5 (1,1:403)  387  0.00 0.74 0.00  UCW017F_E12_BE404894As02P014F05P014F111F1_088.ab1        1   403 (41)  C UCW017R_E12_BE404894As02P014F05P014F111R1_088.ab1   (44)   406     1 *
Merge:(0)    0    0.0 7.3 (1,1:400)  379  0.00 0.75 0.25  UCW030F_A10_BE404894As02P014F05P014F111F1_080.ab1        1   401 (54)  C UCW030R_A10_BE404894As02P014F05P014F111R1_080.ab1   (44)   403     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  190 nodes

 97 str. conn. components

Path
    1  C UCW030R_A10_BE404894As02P014F05P014F111R1_080.ab1   447 
   73    UCW030F_A10_BE404894As02P014F05P014F111F1_080.ab1    26 
   81  C UCW030R_A10_BE404894As02P014F05P014F111R1_080.ab1   367 
   89    UCW030F_A10_BE404894As02P014F05P014F111F1_080.ab1    42 
   97  C UCW030R_A10_BE404894As02P014F05P014F111R1_080.ab1   351 
  105    UCW030F_A10_BE404894As02P014F05P014F111F1_080.ab1    58 
  109  C UCW030R_A10_BE404894As02P014F05P014F111R1_080.ab1   339 
  133    UCW030F_A10_BE404894As02P014F05P014F111F1_080.ab1    86 
  141  C UCW030R_A10_BE404894As02P014F05P014F111R1_080.ab1   307 
  157    UCW030F_A10_BE404894As02P014F05P014F111F1_080.ab1   110 
Contig length: old 501, new 502

Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C UCW017R_E12_BE404894As02P014F05P014F111R1_088.ab1   450 
   69    UCW017F_E12_BE404894As02P014F05P014F111F1_088.ab1    22 
  101  C UCW017R_E12_BE404894As02P014F05P014F111R1_088.ab1   350 
  105    UCW017F_E12_BE404894As02P014F05P014F111F1_088.ab1    58 
  109  C UCW017R_E12_BE404894As02P014F05P014F111R1_088.ab1   342 
  113    UCW017F_E12_BE404894As02P014F05P014F111F1_088.ab1    66 
  145  C UCW017R_E12_BE404894As02P014F05P014F111R1_088.ab1   306 
  149    UCW017F_E12_BE404894As02P014F05P014F111F1_088.ab1   102 
  297  C UCW017R_E12_BE404894As02P014F05P014F111R1_088.ab1   154 
  365    UCW017F_E12_BE404894As02P014F05P014F111F1_088.ab1   318 
  369  C UCW017R_E12_BE404894As02P014F05P014F111R1_088.ab1    82 
  437    UCW017F_E12_BE404894As02P014F05P014F111F1_088.ab1   390 
Contig length: old 490, new 491

Contig length: old 502, new 502
New start: 0 

Contig length: old 491, new 491
New start: 0