No. words: 1804; after pruning: 1752


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:3)  440  0.00 0.00 0.00  UCW017F_G12_BE404894At02P014F05P014F111F1_084.ab1        4   448 (0)    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1        1   445 (11) *
Merge:(0)    0    0.0 7.5 (2,1:406)  389  0.00 0.74 0.00  UCW017F_G12_BE404894At02P014F05P014F111F1_084.ab1        1   406 (42)  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1   (41)   409     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    3    1

Chimera merges: 


Contig 1:  608 nodes

 212 str. conn. components

Path
    1  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1   450 
   69    UCW017F_G12_BE404894At02P014F05P014F111F1_084.ab1    25 
   83    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1    36 
   85  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1   366 
   89    UCW017F_G12_BE404894At02P014F05P014F111F1_084.ab1    45 
  141  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1   310 
  145    UCW017F_G12_BE404894At02P014F05P014F111F1_084.ab1   101 
  151    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1   104 
  191    UCW017F_G12_BE404894At02P014F05P014F111F1_084.ab1   147 
  297  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1   154 
  305    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1   258 
  309  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1   142 
  325    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1   278 
  329  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1   122 
  357    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1   310 
  361  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1    90 
  365    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1   318 
  369  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1    82 
  373    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1   326 
  389  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1    62 
  405    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1   358 
  413  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1    38 
  417    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1   370 
  421  C UCW030R_A12_BE404894At02P014F05P014F111R1_096.ab1    30 
  433    UCW030F_A12_BE404894At02P014F05P014F111F1_096.ab1   386 
Contig length: old 502, new 503

Contig length: old 503, new 503
New start: 0