No. words: 938; after pruning: 912


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:458)  432  0.44 0.44 0.22  UCW006F_B01_BE404894Ld02P002D01D071F1_009.ab1        2   459 (18)  C UCW006R_B01_BE404894Ld02P002D01D071R1_009.ab1   (2)   459     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C UCW006R_B01_BE404894Ld02P002D01D071R1_009.ab1   461 
   20    UCW006F_B01_BE404894Ld02P002D01D071F1_009.ab1    18 
   24  C UCW006R_B01_BE404894Ld02P002D01D071R1_009.ab1   438 
   28    UCW006F_B01_BE404894Ld02P002D01D071F1_009.ab1    26 
   36  C UCW006R_B01_BE404894Ld02P002D01D071R1_009.ab1   426 
   56    UCW006F_B01_BE404894Ld02P002D01D071F1_009.ab1    53 
  200  C UCW006R_B01_BE404894Ld02P002D01D071R1_009.ab1   262 
  344    UCW006F_B01_BE404894Ld02P002D01D071F1_009.ab1   341 
  352  C UCW006R_B01_BE404894Ld02P002D01D071R1_009.ab1   110 
  437    UCW006F_B01_BE404894Ld02P002D01D071F1_009.ab1   434 
  445  C UCW006R_B01_BE404894Ld02P002D01D071R1_009.ab1    17 
  449    UCW006F_B01_BE404894Ld02P002D01D071F1_009.ab1   446 
Contig length: old 479, new 480

Contig length: old 480, new 480
New start: 0