No. words: 1841; after pruning: 1789


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.4 (1,1:541)  503  0.19 0.19 0.19  UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1        5   540 (52)  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1   (54)   538     3 *
Merge:(0)    0    0.0 5.9 (1,1:277)  262  0.00 0.72 0.00  UCW049_C08_BE404894Ta11P002D07P022H121F1_060.ab1        1   277 (53)  C UCW050_C08_BE404894Ta11P002D07P022H121R1_060.ab1   (48)   279     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 4       1        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  134 nodes

 69 str. conn. components

Path
    1  C UCW050_C08_BE404894Ta11P002D07P022H121R1_060.ab1   327 
  114    UCW049_C08_BE404894Ta11P002D07P022H121F1_060.ab1    64 
  118  C UCW050_C08_BE404894Ta11P002D07P022H121R1_060.ab1   210 
  170    UCW049_C08_BE404894Ta11P002D07P022H121F1_060.ab1   120 
  174  C UCW050_C08_BE404894Ta11P002D07P022H121R1_060.ab1   154 
  182    UCW049_C08_BE404894Ta11P002D07P022H121F1_060.ab1   132 
  194  C UCW050_C08_BE404894Ta11P002D07P022H121R1_060.ab1   134 
  210    UCW049_C08_BE404894Ta11P002D07P022H121F1_060.ab1   160 
  266  C UCW050_C08_BE404894Ta11P002D07P022H121R1_060.ab1    62 
  278    UCW049_C08_BE404894Ta11P002D07P022H121F1_060.ab1   228 
  286  C UCW050_C08_BE404894Ta11P002D07P022H121R1_060.ab1    42 
  294    UCW049_C08_BE404894Ta11P002D07P022H121F1_060.ab1   244 
  298  C UCW050_C08_BE404894Ta11P002D07P022H121R1_060.ab1    30 
  306    UCW049_C08_BE404894Ta11P002D07P022H121F1_060.ab1   256 
Contig length: old 379, new 380

Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1   592 
  158    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   107 
  162  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1   431 
  182    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   131 
  186  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1   407 
  406    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   355 
  414  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1   179 
  430    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   379 
  434  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1   159 
  438    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   387 
  446  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1   147 
  466    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   415 
  470  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1   123 
  478    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   427 
  490  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1   103 
  494    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   443 
  506  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1    87 
  518    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   467 
  530  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1    63 
  538    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   487 
  554  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1    39 
  558    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   507 
  579  C UCW050_A10_BE404894Ta11P002D07P022H121R1_080.ab1    15 
  583    UCW049_A10_BE404894Ta11P002D07P022H121F1_080.ab1   532 
Contig length: old 642, new 643

Contig length: old 380, new 380
New start: 0 

Contig length: old 643, new 643
New start: 0