No. words: 1813; after pruning: 1761


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:404)  391  0.00 0.50 0.00  UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1        1   404 (53)  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1   (44)   406     1 *
Merge:(0)    0    0.0 7.3 (1,1:401)  384  0.00 0.75 0.00  UCW030F_A07_BE404894Tu01P014F05P014F111F1_063.ab1        1   401 (54)  C UCW030R_A07_BE404894Tu01P014F05P014F111R1_063.ab1   (47)   404     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  194 nodes

 99 str. conn. components

Path
    1  C UCW030R_A07_BE404894Tu01P014F05P014F111R1_063.ab1   451 
  104    UCW030F_A07_BE404894Tu01P014F05P014F111F1_063.ab1    54 
  116  C UCW030R_A07_BE404894Tu01P014F05P014F111R1_063.ab1   336 
  120    UCW030F_A07_BE404894Tu01P014F05P014F111F1_063.ab1    70 
  124  C UCW030R_A07_BE404894Tu01P014F05P014F111R1_063.ab1   328 
  140    UCW030F_A07_BE404894Tu01P014F05P014F111F1_063.ab1    90 
  148  C UCW030R_A07_BE404894Tu01P014F05P014F111R1_063.ab1   304 
  160    UCW030F_A07_BE404894Tu01P014F05P014F111F1_063.ab1   110 
  196  C UCW030R_A07_BE404894Tu01P014F05P014F111R1_063.ab1   256 
  200    UCW030F_A07_BE404894Tu01P014F05P014F111F1_063.ab1   150 
Contig length: old 504, new 505

Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1   450 
   74    UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1    28 
  110  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1   341 
  114    UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1    68 
  142  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1   309 
  146    UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1   100 
  298  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1   153 
  366    UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1   320 
  370  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1    81 
  374    UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1   328 
  378  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1    73 
  386    UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1   340 
  390  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1    61 
  406    UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1   360 
  410  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1    41 
  418    UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1   372 
  422  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1    29 
  438    UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1   392 
  442  C UCW017R_B12_BE404894Tu01P014F05P014F111R1_094.ab1     9 
  446    UCW017F_B12_BE404894Tu01P014F05P014F111F1_094.ab1   400 
Contig length: old 502, new 503

Contig length: old 505, new 505
New start: 0 

Contig length: old 503, new 503
New start: 0