No. words: 940; after pruning: 914


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:422)  405  0.00 0.00 0.47  UCW007F_A07_BE406609Ld01P013F01F071F1_063.ab1        1   424 (49)  C UCW007R_A07_BE406609Ld01P013F01F071R1_063.ab1   (45)   422     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C UCW007R_A07_BE406609Ld01P013F01F071R1_063.ab1   467 
  321    UCW007F_A07_BE406609Ld01P013F01F071F1_063.ab1   276 
Contig length: old 517, new 518

Contig length: old 518, new 518
New start: 0