No. words: 939; after pruning: 913


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:421)  404  0.00 0.24 0.24  UCW007F_H07_BE406609Ld08P013F01F071F1_049.ab1        1   422 (50)  C UCW007R_H07_BE406609Ld08P013F01F071R1_049.ab1   (45)   422     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C UCW007R_H07_BE406609Ld08P013F01F071R1_049.ab1   467 
  321    UCW007F_H07_BE406609Ld08P013F01F071F1_049.ab1   275 
  325  C UCW007R_H07_BE406609Ld08P013F01F071R1_049.ab1   143 
  349    UCW007F_H07_BE406609Ld08P013F01F071F1_049.ab1   303 
  353  C UCW007R_H07_BE406609Ld08P013F01F071R1_049.ab1   115 
  409    UCW007F_H07_BE406609Ld08P013F01F071F1_049.ab1   363 
  417  C UCW007R_H07_BE406609Ld08P013F01F071R1_049.ab1    51 
  421    UCW007F_H07_BE406609Ld08P013F01F071F1_049.ab1   375 
Contig length: old 517, new 518

Contig length: old 518, new 518
New start: 0