No. words: 947; after pruning: 921


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.2 (1,1:426)  405  0.00 0.24 0.24  UCW007F_B08_BE406609Ld10P013F01F071F1_062.ab1        5   427 (52)  C UCW007R_B08_BE406609Ld10P013F01F071R1_062.ab1   (45)   423     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C UCW007R_B08_BE406609Ld10P013F01F071R1_062.ab1   468 
  308    UCW007F_B08_BE406609Ld10P013F01F071F1_062.ab1   266 
Contig length: old 520, new 521

Contig length: old 521, new 521
New start: 0