No. words: 1162; after pruning: 1136


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.6 (1,1:533)  503  0.00 0.19 0.38  UCW059_H03_BE406609Sn24P033A03P013F011R1_017.ab1        5   535 (49)  C UCW060_H03_BE406609Sn24P033A03P013F011F1_017.ab1   (48)   530     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C UCW060_H03_BE406609Sn24P033A03P013F011F1_017.ab1   578 
   86    UCW059_H03_BE406609Sn24P033A03P013F011R1_017.ab1    41 
   94  C UCW060_H03_BE406609Sn24P033A03P013F011F1_017.ab1   485 
   98    UCW059_H03_BE406609Sn24P033A03P013F011R1_017.ab1    53 
  134  C UCW060_H03_BE406609Sn24P033A03P013F011F1_017.ab1   445 
  138    UCW059_H03_BE406609Sn24P033A03P013F011R1_017.ab1    93 
  146  C UCW060_H03_BE406609Sn24P033A03P013F011F1_017.ab1   433 
  450    UCW059_H03_BE406609Sn24P033A03P013F011R1_017.ab1   405 
Contig length: old 628, new 629

Contig length: old 629, new 629
New start: 0